Turning Resistance into Vulnerability: Leveraging Genetic Insights to Predict Collateral Sensitivity and Synergism for Effective Multidrug Therapies - European Medical Journal

Turning Resistance into Vulnerability: Leveraging Genetic Insights to Predict Collateral Sensitivity and Synergism for Effective Multidrug Therapies

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Authors:
Kara Schmidlin , 1,2 * Kerry Geiler-Samerotte 1,2
  • 1. Center for Mechanisms of Evolution, Arizona State University, Tempe, USA
  • 2. School of Life Sciences, Arizona State University, Tempe, USA
*Correspondence to [email protected]
Disclosure:

This study was funded by the National Institutes of Health (NIH) (grant number R35GM133674), Alfred P Sloan Research Fellowship in Computational and Molecular Evolutionary Biology (grant number FG-2021-15705), and the National Science Foundation Biological Integration Institution (grant number 2119963). The authors declare no conflicts of interest.

Citation:
EMJ Microbiol Infect Dis. ;6[1]:34-35. https://doi.org/10.33590/emjmicrobiolinfectdis/IWEZ9556.
Keywords:
Azole resistance, DNA barcodes, drug resistance, evolutionary tradeoffs, fitness profiles, molecular mechanisms.

Each article is made available under the terms of the Creative Commons Attribution-Non Commercial 4.0 License.

BACKGROUND

The ability to design multidrug treatment strategies that manage, reduce or ideally prevent drug resistance in microbial populations are desperately needed.1 Collateral sensitivity (when resistance to one drug comes with sensitivity to another) and synergism (when two drugs magnify each other’s effects) are both promising strategies. However, both can fail when rare adaptive mutations do not display collateral sensitivity or synergism as expected. Therefore, designing a successful multidrug regimen requires extensive screening of drug environments and adaptive mutations to make accurate predictions about treatment success.

METHODS

Here the authors used novel, massively parallel technology to screen ~300,000 barcoded Saccharomyces cerevisiae lineages as they adapt to different concentrations and/or combinations of fluconazole and radicicol. The authors observed a wide range of mutants conferring drug resistance, and performed subsequent experiments quantifying how these mutants respond to sequential and combination drug challenges.

RESULTS

Thousands of evolved mutants clustered into six distinct groups with unique collateral sensitivities and synergy profiles, suggesting there are fundamental differences in their underlying resistance mechanisms.2 Fluconazole-adaptive mutants demonstrated more predictable collateral sensitivity profiles, while radicicol-adaptive mutants exhibited diverse and less-consistent tradeoffs. Notably, across both types of drug-resistant mutants, single-point mutations resulted in significantly varied outcomes in drug combinations, underscoring the challenges in evolutionary medicine pertaining to designing effective multidrug therapies that reliably exploit synergistic drug interactions.3

CONCLUSION

While leveraging collateral sensitivity and synergism offers significant therapeutic potential, understanding and predicting them requires comprehensive studies to map the complex genetic and environmental factors that influence microbial evolution. By systematically categorising adaptive mutations and their tradeoffs in many single, sequential, and double drug treatments, the authors study provides critical insights into the complexity of antifungal resistance and informs strategies for more effective, evolutionary-informed therapies.

References
Schmidlin and Geiler-Samerotte. Turning resistance into vulnerability: leveraging genetic insights to predict collateral sensitivity and synergism for effective multidrug therapies. O0691. ESCMID Global 2025, 11-15 April, 2025. Schmidlin K et al. Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs. eLife. 2024; DOI:10.7554/eLife.94144. Schmidlin K et al. Environment by environment interactions (ExE) differ across genetic backgrounds (ExExG). bioRxiv. 2024; DOI:10.1101/2024.05.08.593194.

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